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Example of a small fasta file that can be used as input

Source: R/datasets.R, R/fasta.R
fasta.Rd

This database contains sequences in fasta format

This is an example of a fasta file to be used as input

Usage

fasta

fasta

Format

small fasta file containing headers and sequences

fasta

Examples

# Load file
data(fasta)

# Visualize the file
head(fasta)
#> AAStringSet object of length 6:
#>     width seq                                               names               
#> [1]   213 MMTCRLLCALLVLALCCCPSVCV...SSSAWVCAPLLLAVSALAYTTVC TcYC6_0151310-RA-p1
#> [2]   186 MMTCRLLCALLVLTLCCCPSVGG...SSSAWVCAPLLLAASALAYTAVG TcYC6_0151320-RA-p1
#> [3]   194 MMTCRLLCALLVLALCCCPSVCA...SSSAWMCAPLLLAVSALVHTTLS TcYC6_0151330-RA-p1
#> [4]   230 MMMTCRLLCALLVLALCCCQSIC...SSSAWVCAPLLLAVSALAYTTLG TcYC6_0151340-RA-p1
#> [5]   184 MMTCRLLCALLVLALCCCPSVGA...SSSAWVCAPLLLAASALAYTTLS TcYC6_0151350-RA-p1
#> [6]   186 MMTCRLLCALLVLALCCCPSVGA...SSSAWVCAPLLLAASALAYTTLG TcYC6_0151360-RA-p1